SWG-Software
| Susan Whitefield-Gabrieli | Sofware | Documents | Links | Imaging Library | Seminars & Courses | Publications |
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NEUROIMAGING SOFTWARE |
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Quality Assurance |
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Artifact Detection Tools
http://www.nitrc.org/projects/artifact_detect |
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Functional Connectivity |
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Connectivity Toolbox |
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Region of Interest (ROI) |
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REX Toolbox |
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SWG-Documents
SWG-Links
| Susan Whitefield-Gabrieli | Software | Documents | Links | Imaging Library | Seminars & Courses |Publications | |
| Matthew Brett's MNI and TAL page | http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach |
| Anatomic Automatic Labeling (AAL) | http://www.cyceron.fr/freeware/ |
| Whole Brain Atlas | http://www.med.harvard.edu/AANLIB/home.html |
| Talairach Daemon | http://ric.uthscsa.edu/RIC_WWW.data/Components/talairach/talairachdaemon.html |
| SPM SurfRend | http://spmsurfrend.sourceforge.net/Documentation/Documentation.html |
| Xjview | http://people.hnl.bcm.tmc.edu/cuixu/xjView/ |
SWG-Seminars & Courses
| Susan Whitefield-Gabrieli | Sofware | Documents | Links | Imaging Library | Seminars & Courses | Publications | |
Seminars: |
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HST 583 - fMRI Data Acquisition and AnalysisOctober 6 - 10, 2008
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fMRI Quality ControlJune 26, 2007 - 4:00pm-6:00pm, MGH Charlestown Seminar offered as part of the Multi-Modality Short Course (2 weeks: June 18-29, 2007) at MGH. |
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HST 583 - fMRI Acquisition LabSeptember 11, 2006 - 1:00pm-4:00pm, 46-4062 Lab on acquisition of fMRI data. |
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fMRI - An Introduction to AnalysisJune 26, 2007 - 4:00pm-6:00pm, MGH Charlestown Introduction to artifact detection and rejection in functional neuroimaging and an overview of the Brain Imaging Tools (BIT) toolbox for SPM. |
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Courses: |
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SWG-ImagingLibrary
| Susan Whitefield-Gabrieli | Sofware | Documents | Links | Imaging Library | Seminars & Courses | Publications |
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Imaging Library - fMRI Experimental Design Bandettini, P.A. and Cox, R.W. (2000). Event-related fMRI contrast when using constant interstimulus interval: theory and experiment. Magnetic Resonance in Medicine, 43, 540-548. [pdf] Dale, A.M. (1999). Optimal experimental design for event-related fMRI. Human Brain Mapping, 8, 109-114. [pdf] Friston, K.J., Zarahm, E., Josephs, O., Henson, R.N.A., and Dale, A.M. (1999). Stochastic designs in event-related fMRI. NeuroImage, 10, 607-619. [pdf] Glover, G.H. (1999). Deconvolution of impulse response in event-related BOLD fMRI. NeuroImage, 9, 416-429. [pdf] Liu, T.T., Frank, L.R., Wong, E.C., and Buxton, R.B. (2001). Detection power, estimation efficiency, and predictability in event-related fMRI. NeuroImage, 13, 759-773. [pdf] Liu, T.T. (2004). Efficiency, power, and entropy in event-related fMRI with multiple trial types. Part II: design of experiments. NeuroImage, 21, 401-413. [pdf] Mechelli, A., Henson, R.N.A., Price, C.J., and Friston, K.J. (2003). Comparing event-related and epoch analysis in blocked design fMRI. NeuroImage, 18, 806-810. [pdf] Miezin, F.M., Maccotta, L., Ollinger, J.M., Petersen, S.E., and Buckner, R.L. (2000). Characterizing the hemodynamic response: effects of presentation rate, sampling procedure, and the possibility of ordering brain activity based on relative timing. NeuroImage, 11, 735-759. [pdf] Wager, T.D. and Nichols, T.E. (2003). Optimization of experimental design in fMRI: a general framework using a genetic algorithm. NeuroImage, 18, 293-309. [pdf] |
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